Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00952.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5038
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37


Found at i:4614 original size:39 final size:39

Alignment explanation


    Indices: 4560--4744  Score: 262
    Period size: 39  Copynumber: 4.7  Consensus size: 39

       4550 TGTGTGAGAT

                   *                            * *
       4560 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
          1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA

                    *                           *  
       4599 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
          1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA

                                                   
       4638 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
          1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA

                       *     *                    *
       4677 TTATATCCGGGTTAAGTTCCGAAGGCATTCGTGCTGATG
          1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA

                  *    *     * *         
       4716 TTATATTCGGGTTAAGTTCTGAAGGCATT
          1 TTATATCCGGGCTAAGTCCCGAAGGCATT

       4745 TGGGTTGGAA


Statistics
Matches: 136,  Mismatches: 10, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  39  136  1.00

ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32


Consensus pattern (39 bp):   
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA

Done.