Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00961.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3575
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34


Found at i:2728 original size:120 final size:120

Alignment explanation


    Indices: 2509--2749  Score: 428
    Period size: 120  Copynumber: 2.0  Consensus size: 120

       2499 TGTTTAGTGG

                                                  *                          
       2509 GTGTCCCAGCTTGGACACTATGAGATTGTGACTTCATCTTTGCTGTTAGAGCTATAGGTGTACTA
          1 GTGTCCCAGCTTGGACACTATGAGATTGTGACTTCATCGTTGCTGTTAGAGCTATAGGTGTACTA

                                       *             *             
       2574 ACATACGTCTTTATTTGTTTCTCCATATTCTTTTAAGATAATAGCTGAGGTAGGT
         66 ACATACGTCTTTATTTGTTTCTCCATACTCTTTTAAGATAAAAGCTGAGGTAGGT

                *                                                            
       2629 GTGTTCCAGCTTGGACACTATGAGATTGTGACTTCATCGTTGCTGTTAGAGCTATAGGTGTACTA
          1 GTGTCCCAGCTTGGACACTATGAGATTGTGACTTCATCGTTGCTGTTAGAGCTATAGGTGTACTA

                *                        *                         
       2694 ACATGCGTCTTTATTTGTTTCTCCATACTGTTTTAAGATAAAAGCTGAGGTAGGT
         66 ACATACGTCTTTATTTGTTTCTCCATACTCTTTTAAGATAAAAGCTGAGGTAGGT

             
       2749 G
          1 G

       2750 GATTCTTTGT


Statistics
Matches: 115,  Mismatches: 6, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
 120  115  1.00

ACGTcount: A:0.23, C:0.16, G:0.22, T:0.38


Consensus pattern (120 bp):   
GTGTCCCAGCTTGGACACTATGAGATTGTGACTTCATCGTTGCTGTTAGAGCTATAGGTGTACTA
ACATACGTCTTTATTTGTTTCTCCATACTCTTTTAAGATAAAAGCTGAGGTAGGT
Done.