Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00977.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 796

Length: 1328
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26


Found at i:1208 original size:38 final size:39

Alignment explanation


    Indices: 1157--1232  Score: 118
    Period size: 39  Copynumber: 2.0  Consensus size: 39

       1147 CTCACAGTTC

                                   *               
       1157 ACCAACATGTTTGGTC-TTTGCAGTTAGGTGACATGATG
          1 ACCAACATGTTTGGTCTTTTGCAATTAGGTGACATGATG

                                        *  *      
       1195 ACCAACATGTTTGGTCTTTTGCAATTAGTTGTCATGAT
          1 ACCAACATGTTTGGTCTTTTGCAATTAGGTGACATGAT

       1233 CGGTTGTATC


Statistics
Matches: 34,  Mismatches: 3, Indels: 1
        0.89            0.08        0.03

Matches are distributed among these distances:
  38   16  0.47
  39   18  0.53

ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38


Consensus pattern (39 bp):   
ACCAACATGTTTGGTCTTTTGCAATTAGGTGACATGATG

Done.