Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00985.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 784

Length: 1307
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30


Found at i:1034 original size:42 final size:42

Alignment explanation


    Indices: 977--1140  Score: 143
    Period size: 42  Copynumber: 3.9  Consensus size: 42

        967 TAGGGTTATG

                    *          *   *                  
        977 TGTGATTTTGTGTAAGACCGTATTTGGGATATGGCATCGATA
          1 TGTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA

                                 *    *  *            
       1019 TGTGATTTCGTGTAAGACCATGTCTGCGACATGGCATCGATA
          1 TGTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA

             *     *               *     *              
       1061 CAG-GATATCGTGT-AGACCATAACTGGGCTATCGGCATCGATA
          1 -TGTGATTTCGTGTAAGACCATATCTGGGATAT-GGCATCGATA

              *    ** *     *       *             
       1103 TATTGATCCCATGTAAAACCATATATGGGATATGGCAT
          1 T-GTGATTTCGTGTAAGACCATATCTGGGATATGGCAT

       1141 TGGCATCTTA


Statistics
Matches: 95,  Mismatches: 22, Indels: 9
        0.75            0.17        0.07

Matches are distributed among these distances:
  41   13  0.14
  42   55  0.58
  43   13  0.14
  44   14  0.15

ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31


Consensus pattern (42 bp):   
TGTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
Done.