Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00988.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8426
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34


Found at i:5960 original size:58 final size:58

Alignment explanation


    Indices: 5891--6064  Score: 348
    Period size: 58  Copynumber: 3.0  Consensus size: 58

       5881 AAAAATTAAG

                                                                      
       5891 CTCTTCTTGCTCCATTTGATAATACCACAATTGTGCCTTTCCCGTCAAGTGAAAACCA
          1 CTCTTCTTGCTCCATTTGATAATACCACAATTGTGCCTTTCCCGTCAAGTGAAAACCA

                                                                      
       5949 CTCTTCTTGCTCCATTTGATAATACCACAATTGTGCCTTTCCCGTCAAGTGAAAACCA
          1 CTCTTCTTGCTCCATTTGATAATACCACAATTGTGCCTTTCCCGTCAAGTGAAAACCA

                                                                      
       6007 CTCTTCTTGCTCCATTTGATAATACCACAATTGTGCCTTTCCCGTCAAGTGAAAACCA
          1 CTCTTCTTGCTCCATTTGATAATACCACAATTGTGCCTTTCCCGTCAAGTGAAAACCA

       6065 GTTAGACTCC


Statistics
Matches: 116,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  58  116  1.00

ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33


Consensus pattern (58 bp):   
CTCTTCTTGCTCCATTTGATAATACCACAATTGTGCCTTTCCCGTCAAGTGAAAACCA
Done.