Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01006.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 282

Length: 471
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28


Found at i:373 original size:16 final size:18

Alignment explanation


    Indices: 342--374  Score: 52
    Period size: 16  Copynumber: 1.9  Consensus size: 18

        332 AACTCGTCAC

                              
        342 ACTATCTATCGTTTTGGT
          1 ACTATCTATCGTTTTGGT

                             
        360 ACTAT-TAT-GTTTTGG
          1 ACTATCTATCGTTTTGG

        375 AATTTGTATG


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  16    7  0.47
  17    3  0.20
  18    5  0.33

ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52


Consensus pattern (18 bp):   
ACTATCTATCGTTTTGGT
Done.