Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01011.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 688

Length: 1148
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29


Found at i:349 original size:34 final size:33

Alignment explanation


    Indices: 305--389  Score: 125
    Period size: 33  Copynumber: 2.5  Consensus size: 33

        295 GGGATTATTA

                                               
        305 TACTGGTGTTGAAGACACCAACGAAGTAATAAGAG
          1 TACT-GTGTTGAAGACACCAACGAAGT-ATAAGAG

                                *       *    
        340 TACTGTGTTGAAGACACCAATGAAGTATTAGAG
          1 TACTGTGTTGAAGACACCAACGAAGTATAAGAG

                *            
        373 TACTCTGTTGAAGACAC
          1 TACTGTGTTGAAGACAC

        390 TTTCAACTAA


Statistics
Matches: 47,  Mismatches: 3, Indels: 2
        0.90            0.06        0.04

Matches are distributed among these distances:
  33   22  0.47
  34   21  0.45
  35    4  0.09

ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25


Consensus pattern (33 bp):   
TACTGTGTTGAAGACACCAACGAAGTATAAGAG

Found at i:719 original size:18 final size:18

Alignment explanation


    Indices: 696--730  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        686 AGGCGCTCTC

                   *   *      
        696 CACCAAGTTATTCTCGAT
          1 CACCAAGATATGCTCGAT

                             
        714 CACCAAGATATGCTCGA
          1 CACCAAGATATGCTCGA

        731 AGTTACTCCC


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26


Consensus pattern (18 bp):   
CACCAAGATATGCTCGAT
Done.