Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01011.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 561

Length: 936
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29


Found at i:507 original size:18 final size:18

Alignment explanation


    Indices: 484--518  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        474 AGGCGCTCTC

                   *   *      
        484 CACCAAGTTATTCTCGAT
          1 CACCAAGATATGCTCGAT

                             
        502 CACCAAGATATGCTCGA
          1 CACCAAGATATGCTCGA

        519 AGTTACTCCC


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26


Consensus pattern (18 bp):   
CACCAAGATATGCTCGAT
Done.