Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01020.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 805

Length: 1342
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.31


Found at i:76 original size:6 final size:6

Alignment explanation


    Indices: 65--89  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

         55 CACCACCCGT

                                         
         65 CCTCCA CCTCCA CCTCCA CCTCCA C
          1 CCTCCA CCTCCA CCTCCA CCTCCA C

         90 TCCGCCTAAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.16, C:0.68, G:0.00, T:0.16


Consensus pattern (6 bp):   
CCTCCA

Done.