Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01021.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 988

Length: 1647
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29


Found at i:1427 original size:2 final size:2

Alignment explanation


    Indices: 1420--1514  Score: 190
    Period size: 2  Copynumber: 47.5  Consensus size: 2

       1410 GCCTCCTAAT

                                                                          
       1420 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
          1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC

                                                                          
       1462 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
          1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC

                            
       1504 AC AC AC AC AC A
          1 AC AC AC AC AC A

       1515 TACATATCAT


Statistics
Matches: 93,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   93  1.00

ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00


Consensus pattern (2 bp):   
AC

Done.