Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01023.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1887
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30


Found at i:706 original size:21 final size:21

Alignment explanation


    Indices: 680--723  Score: 88
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        670 GGTTGAAGAA

                                 
        680 ATCCAAGGTATGCATTCATTC
          1 ATCCAAGGTATGCATTCATTC

                                 
        701 ATCCAAGGTATGCATTCATTC
          1 ATCCAAGGTATGCATTCATTC

              
        722 AT
          1 AT

        724 TGTGTCTTCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.30, C:0.23, G:0.14, T:0.34


Consensus pattern (21 bp):   
ATCCAAGGTATGCATTCATTC
Done.