Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00838.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 567

Length: 946
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36


Found at i:857 original size:16 final size:16

Alignment explanation


    Indices: 829--873  Score: 56
    Period size: 16  Copynumber: 2.9  Consensus size: 16

        819 TATTTTTCTA

                 *          
        829 TTTTGGTTT-TTTTGT
          1 TTTTGATTTATTTTGT

                            
        844 TTTTGATTTATTTTGT
          1 TTTTGATTTATTTTGT

                **        
        860 TTTTTTTTTATTTT
          1 TTTTGATTTATTTT

        874 TTCTGTAAGC


Statistics
Matches: 26,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  15    8  0.31
  16   18  0.69

ACGTcount: A:0.07, C:0.00, G:0.11, T:0.82


Consensus pattern (16 bp):   
TTTTGATTTATTTTGT
Done.