Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01025.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3300
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34


Found at i:971 original size:39 final size:39

Alignment explanation


    Indices: 926--1116  Score: 337
    Period size: 39  Copynumber: 4.9  Consensus size: 39

        916 ATGCAAGACA

                              *                    
        926 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
          1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG

                    *                              
        965 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
          1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG

                                                   
       1004 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
          1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG

                                                   
       1043 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
          1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG

             *               **                
       1082 CGGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTT
          1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTT

       1117 TGTACTGGTA


Statistics
Matches: 146,  Mismatches: 6, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  39  146  1.00

ACGTcount: A:0.21, C:0.27, G:0.30, T:0.21


Consensus pattern (39 bp):   
CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG

Done.