Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01025.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4206
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36


Found at i:1877 original size:39 final size:39

Alignment explanation


    Indices: 1832--2022  Score: 337
    Period size: 39  Copynumber: 4.9  Consensus size: 39

       1822 ATGCAAGACA

                              *                    
       1832 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
          1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG

                    *                              
       1871 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
          1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG

                                                   
       1910 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
          1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG

                                                   
       1949 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
          1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG

             *               **                
       1988 CGGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTT
          1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTT

       2023 TGTACTGGTA


Statistics
Matches: 146,  Mismatches: 6, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  39  146  1.00

ACGTcount: A:0.21, C:0.27, G:0.30, T:0.21


Consensus pattern (39 bp):   
CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG

Done.