Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01043.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 262

Length: 437
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27


Found at i:262 original size:39 final size:39

Alignment explanation


    Indices: 200--351  Score: 241
    Period size: 39  Copynumber: 3.9  Consensus size: 39

        190 TTCCGAGACA

                              *      *             
        200 CTGGAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTG
          1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG

                    *    *                         
        239 CTGGAAATATATCTGGGCCAAAGTCCCGCAGGCTTCGTG
          1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG

                                                   
        278 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
          1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG

             *               **                
        317 CGGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTT
          1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTT

        352 TGTACTGGTA


Statistics
Matches: 104,  Mismatches: 9, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  39  104  1.00

ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23


Consensus pattern (39 bp):   
CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG

Done.