Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00079.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2446
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.31


Found at i:2003 original size:23 final size:22

Alignment explanation


    Indices: 1961--2008  Score: 62
    Period size: 23  Copynumber: 2.1  Consensus size: 22

       1951 ATTGAACTTG

                                   
       1961 AAAATTAAAATTTAAAAAATAGA
          1 AAAATTAAAATTTAAAAAATA-A

                          *        
       1984 AAAATT-AAATTCTTAAAAATAA
          1 AAAATTAAAATT-TAAAAAATAA

               
       2006 AAA
          1 AAA

       2009 CTAGAGACTA


Statistics
Matches: 23,  Mismatches: 1, Indels: 3
        0.85            0.04        0.11

Matches are distributed among these distances:
  22    9  0.39
  23   14  0.61

ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27


Consensus pattern (22 bp):   
AAAATTAAAATTTAAAAAATAA
Done.