Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01049.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 928

Length: 1547
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32


Found at i:1458 original size:2 final size:2

Alignment explanation


    Indices: 1451--1481  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       1441 AAGAATTTGT

                                                          
       1451 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1482 TTACGTGTGT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.