Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01056.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4405
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34


Found at i:1081 original size:45 final size:45

Alignment explanation


    Indices: 1017--1108  Score: 184
    Period size: 45  Copynumber: 2.0  Consensus size: 45

       1007 CAGGTAAGCG

                                                         
       1017 AAGGTAAATTTCCTAACCGAGCATTATAGAAATCCAAATTAGGAT
          1 AAGGTAAATTTCCTAACCGAGCATTATAGAAATCCAAATTAGGAT

                                                         
       1062 AAGGTAAATTTCCTAACCGAGCATTATAGAAATCCAAATTAGGAT
          1 AAGGTAAATTTCCTAACCGAGCATTATAGAAATCCAAATTAGGAT

              
       1107 AA
          1 AA

       1109 TATTTTACCT


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  45   47  1.00

ACGTcount: A:0.43, C:0.15, G:0.15, T:0.26


Consensus pattern (45 bp):   
AAGGTAAATTTCCTAACCGAGCATTATAGAAATCCAAATTAGGAT
Done.