Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01060.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1870
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33


Found at i:1301 original size:34 final size:34

Alignment explanation


    Indices: 1263--1330  Score: 102
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       1253 CATTGCAGTT

                        *          *           
       1263 GTTTCTCTACTTTAA-TGCATATGTTGTGATTATG
          1 GTTTCTCTACTTAAATTG-ATATCTTGTGATTATG

                                              
       1297 GTTTCTCTACTTAAATTGATATCTTGTGATTATG
          1 GTTTCTCTACTTAAATTGATATCTTGTGATTATG

       1331 TTATATTTGT


Statistics
Matches: 31,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
  34   29  0.94
  35    2  0.06

ACGTcount: A:0.22, C:0.12, G:0.16, T:0.50


Consensus pattern (34 bp):   
GTTTCTCTACTTAAATTGATATCTTGTGATTATG
Done.