Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01067.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3091
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35


Found at i:277 original size:7 final size:7

Alignment explanation


    Indices: 265--291  Score: 54
    Period size: 7  Copynumber: 3.9  Consensus size: 7

        255 TAACTTGGTA

                   
        265 TGGAGAG
          1 TGGAGAG

                   
        272 TGGAGAG
          1 TGGAGAG

                   
        279 TGGAGAG
          1 TGGAGAG

                  
        286 TGGAGA
          1 TGGAGA

        292 ATCGGAGATG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   20  1.00

ACGTcount: A:0.30, C:0.00, G:0.56, T:0.15


Consensus pattern (7 bp):   
TGGAGAG

Found at i:2469 original size:44 final size:44

Alignment explanation


    Indices: 2406--2494  Score: 178
    Period size: 44  Copynumber: 2.0  Consensus size: 44

       2396 GCTATTACTT

                                                        
       2406 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
          1 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA

                                                        
       2450 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
          1 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA

             
       2494 T
          1 T

       2495 GATGCTATAG


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  44   45  1.00

ACGTcount: A:0.27, C:0.13, G:0.13, T:0.46


Consensus pattern (44 bp):   
TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
Done.