Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00845.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 733

Length: 1223
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31


Found at i:128 original size:11 final size:12

Alignment explanation


    Indices: 88--131  Score: 54
    Period size: 12  Copynumber: 3.7  Consensus size: 12

         78 CCTTGTTTCC

                       * 
         88 CTTTCCCTTCCTT
          1 CTTT-CCTTCCAT

                 *      
        101 CTTTCTTTCCAT
          1 CTTTCCTTCCAT

                        
        113 CTTTCCTTCC-T
          1 CTTTCCTTCCAT

                    
        124 CTTTCCTT
          1 CTTTCCTT

        132 TGTCTTCTTG


Statistics
Matches: 28,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  11    9  0.32
  12   15  0.54
  13    4  0.14

ACGTcount: A:0.02, C:0.41, G:0.00, T:0.57


Consensus pattern (12 bp):   
CTTTCCTTCCAT

Done.