Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01086.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3426
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33


Found at i:878 original size:64 final size:64

Alignment explanation


    Indices: 799--928  Score: 251
    Period size: 64  Copynumber: 2.0  Consensus size: 64

        789 TACCCAACTT

                             *                                              
        799 CTGGAGTTCTAGGAACGGGTTGATTTTGAGTTAGCTCGTAAAAGAAGTTGATATTCAGGAAGCA
          1 CTGGAGTTCTAGGAACGAGTTGATTTTGAGTTAGCTCGTAAAAGAAGTTGATATTCAGGAAGCA

                                                                            
        863 CTGGAGTTCTAGGAACGAGTTGATTTTGAGTTAGCTCGTAAAAGAAGTTGATATTCAGGAAGCA
          1 CTGGAGTTCTAGGAACGAGTTGATTTTGAGTTAGCTCGTAAAAGAAGTTGATATTCAGGAAGCA

              
        927 CT
          1 CT

        929 TACTAACCCA


Statistics
Matches: 65,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  64   65  1.00

ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30


Consensus pattern (64 bp):   
CTGGAGTTCTAGGAACGAGTTGATTTTGAGTTAGCTCGTAAAAGAAGTTGATATTCAGGAAGCA
Done.