Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01103.M3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5946
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:4733 original size:29 final size:29

Alignment explanation


    Indices: 4700--4758  Score: 100
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       4690 ATGTAAAAAG

                      *                  
       4700 ATAGAGAGAACAGAAACCTTAAGTGATAA
          1 ATAGAGAGAAAAGAAACCTTAAGTGATAA

                          *              
       4729 ATAGAGAGAAAAGAGACCTTAAGTGATAA
          1 ATAGAGAGAAAAGAAACCTTAAGTGATAA

             
       4758 A
          1 A

       4759 AGTCTACTTG


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  29   28  1.00

ACGTcount: A:0.53, C:0.08, G:0.22, T:0.17


Consensus pattern (29 bp):   
ATAGAGAGAAAAGAAACCTTAAGTGATAA
Done.