Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01121.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3507
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31


Found at i:3470 original size:40 final size:40

Alignment explanation


    Indices: 3393--3474  Score: 101
    Period size: 40  Copynumber: 2.0  Consensus size: 40

       3383 TTGACTTGTA

                      *  *         *        *       
       3393 AATGGTTGGATAATATGGTGGTATACACCGTGGAAGGTGT
          1 AATGGTTGGACAACATGGTGGTACACACCGTGAAAGGTGT

                                     * **           
       3433 AATGGTTGGACAACATGGTGGTACATATTGTGAAAGGTGT
          1 AATGGTTGGACAACATGGTGGTACACACCGTGAAAGGTGT

              
       3473 AA
          1 AA

       3475 AGAGTCATTA


Statistics
Matches: 35,  Mismatches: 7, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  40   35  1.00

ACGTcount: A:0.30, C:0.07, G:0.33, T:0.29


Consensus pattern (40 bp):   
AATGGTTGGACAACATGGTGGTACACACCGTGAAAGGTGT
Done.