Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01127.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2597
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29


Found at i:83 original size:4 final size:4

Alignment explanation


    Indices: 74--98  Score: 50
    Period size: 4  Copynumber: 6.2  Consensus size: 4

         64 TGCTTTCCCT

                                           
         74 CATC CATC CATC CATC CATC CATC C
          1 CATC CATC CATC CATC CATC CATC C

         99 TCGCTCCTTA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   21  1.00

ACGTcount: A:0.24, C:0.52, G:0.00, T:0.24


Consensus pattern (4 bp):   
CATC

Done.