Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01148.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3087
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25


Found at i:3018 original size:27 final size:27

Alignment explanation


    Indices: 2988--3040  Score: 106
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       2978 CGAGTGGAGA

                                       
       2988 GTGCCTAGTTCAACTACTAGAATTTGC
          1 GTGCCTAGTTCAACTACTAGAATTTGC

                                      
       3015 GTGCCTAGTTCAACTACTAGAATTTG
          1 GTGCCTAGTTCAACTACTAGAATTTG

       3041 TGTACTTTCA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   26  1.00

ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34


Consensus pattern (27 bp):   
GTGCCTAGTTCAACTACTAGAATTTGC

Found at i:3050 original size:24 final size:26

Alignment explanation


    Indices: 2996--3053  Score: 75
    Period size: 27  Copynumber: 2.3  Consensus size: 26

       2986 GAGTGCCTAG

                                  *   
       2996 TTCAACTACTAGAATTTGCGTGCCTA
          1 TTCAACTACTAGAATTTGCGTGACTA

                               *       
       3022 GTTCAACTACTAGAATTTGTGT-ACT-
          1 -TTCAACTACTAGAATTTGCGTGACTA

                   
       3047 TTCAACT
          1 TTCAACT

       3054 GGATAATATC


Statistics
Matches: 29,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  24    7  0.24
  26    2  0.07
  27   20  0.69

ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38


Consensus pattern (26 bp):   
TTCAACTACTAGAATTTGCGTGACTA
Done.