Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01171.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 702

Length: 1170
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35


Found at i:176 original size:68 final size:69

Alignment explanation


    Indices: 66--224  Score: 196
    Period size: 68  Copynumber: 2.3  Consensus size: 69

         56 TCAACTTTTC

                             *       *                                       
         66 CCTTCTCCCTCTTTTTCGTTCTCACGTCTGAAGCAACTTCTTTTTTTCA-TTCTTCCCATTTCCT
          1 CCTTCT-CCTCTTTTTCATTCTCACATCTGAAGCAACTTCTTTTTTTCATTTCTTCCCATTTCCT

                 
        130 TCCAA
         65 TCCAA

                               *        *  *  *                              
        135 CCTTCTCCTCTTTTTCATTGTCACATCTTAATCATCTTCTTTTTTTCATTCTTCTTCCCATTTCC
          1 CCTTCTCCTCTTTTTCATTCTCACATCTGAAGCAACTTCTTTTTTTCA-T-TTCTTCCCATTTCC

                 *
        200 TTCCAT
         64 TTCCAA

                                
        206 CCATGTCT-CTCTTTTTCAT
          1 CC-T-TCTCCTCTTTTTCAT

        225 GCTTCTATCC


Statistics
Matches: 78,  Mismatches: 7, Indels: 7
        0.85            0.08        0.08

Matches are distributed among these distances:
  68   36  0.46
  69    6  0.08
  71   21  0.27
  72   12  0.15
  73    3  0.04

ACGTcount: A:0.13, C:0.33, G:0.04, T:0.50


Consensus pattern (69 bp):   
CCTTCTCCTCTTTTTCATTCTCACATCTGAAGCAACTTCTTTTTTTCATTTCTTCCCATTTCCTT
CCAA
Done.