Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01187.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3471
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.38


Found at i:2806 original size:24 final size:25

Alignment explanation


    Indices: 2744--2806  Score: 67
    Period size: 25  Copynumber: 2.6  Consensus size: 25

       2734 GGACTCACCA

                 *                   
       2744 CAGCTTGTATGAGCTTACCGATATT
          1 CAGCTCGTATGAGCTTACCGATATT

                   * *            *   
       2769 CAGCTCGGAGGAGCTTACCG-TTTAT
          1 CAGCTCGTATGAGCTTACCGATAT-T

                          
       2794 C-GCTCGTATGAGC
          1 CAGCTCGTATGAGC

       2807 CTACATGTTC


Statistics
Matches: 31,  Mismatches: 6, Indels: 3
        0.77            0.15        0.08

Matches are distributed among these distances:
  24   12  0.39
  25   19  0.61

ACGTcount: A:0.21, C:0.24, G:0.25, T:0.30


Consensus pattern (25 bp):   
CAGCTCGTATGAGCTTACCGATATT
Done.