Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01219.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2505
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33


Found at i:715 original size:46 final size:46

Alignment explanation


    Indices: 648--739  Score: 184
    Period size: 46  Copynumber: 2.0  Consensus size: 46

        638 AAGTAAAGGC

                                                          
        648 TTTAATAAATTTATGGTTGTGGCATGTCCTAGGTTTCATATTCCTT
          1 TTTAATAAATTTATGGTTGTGGCATGTCCTAGGTTTCATATTCCTT

                                                          
        694 TTTAATAAATTTATGGTTGTGGCATGTCCTAGGTTTCATATTCCTT
          1 TTTAATAAATTTATGGTTGTGGCATGTCCTAGGTTTCATATTCCTT

        740 CACGAACTAC


Statistics
Matches: 46,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  46   46  1.00

ACGTcount: A:0.22, C:0.13, G:0.17, T:0.48


Consensus pattern (46 bp):   
TTTAATAAATTTATGGTTGTGGCATGTCCTAGGTTTCATATTCCTT
Done.