Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01261.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2844
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34


Found at i:1136 original size:18 final size:18

Alignment explanation


    Indices: 1113--1157  Score: 72
    Period size: 18  Copynumber: 2.5  Consensus size: 18

       1103 TGAGAAACCT

                              
       1113 ACTATGGAGTTATTGACA
          1 ACTATGGAGTTATTGACA

                             *
       1131 ACTATGGAGTTATTGACG
          1 ACTATGGAGTTATTGACA

              *      
       1149 ACCATGGAG
          1 ACTATGGAG

       1158 GGAATTGTAG


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  18   25  1.00

ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29


Consensus pattern (18 bp):   
ACTATGGAGTTATTGACA
Done.