Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01265.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3136
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29


Found at i:1795 original size:17 final size:17

Alignment explanation


    Indices: 1753--1795  Score: 63
    Period size: 15  Copynumber: 2.6  Consensus size: 17

       1743 TCATATCCCT

                             
       1753 TTGTCCTCTTGGAATTA
          1 TTGTCCTCTTGGAATTA

                             
       1770 -T-TCCTCTTGGAATTA
          1 TTGTCCTCTTGGAATTA

                *      
       1785 TTGTACTCTTG
          1 TTGTCCTCTTG

       1796 CAGAAAGAGC


Statistics
Matches: 23,  Mismatches: 1, Indels: 4
        0.82            0.04        0.14

Matches are distributed among these distances:
  15   14  0.61
  16    2  0.09
  17    7  0.30

ACGTcount: A:0.16, C:0.19, G:0.16, T:0.49


Consensus pattern (17 bp):   
TTGTCCTCTTGGAATTA

Found at i:2216 original size:36 final size:36

Alignment explanation


    Indices: 2176--2253  Score: 120
    Period size: 36  Copynumber: 2.2  Consensus size: 36

       2166 CTCTGGAATC

                 *        *                     
       2176 AACACTACCTAAACTTGATACAAAAGAGAATCCCAA
          1 AACACAACCTAAACCTGATACAAAAGAGAATCCCAA

                                             ** 
       2212 AACACAACCTAAACCTGATACAAAAGAGAATCCTGA
          1 AACACAACCTAAACCTGATACAAAAGAGAATCCCAA

                  
       2248 AACACA
          1 AACACA

       2254 GCCGGTGCTA


Statistics
Matches: 38,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  36   38  1.00

ACGTcount: A:0.51, C:0.26, G:0.09, T:0.14


Consensus pattern (36 bp):   
AACACAACCTAAACCTGATACAAAAGAGAATCCCAA
Done.