Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01265.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3864
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30


Found at i:2944 original size:36 final size:36

Alignment explanation


    Indices: 2904--2981  Score: 120
    Period size: 36  Copynumber: 2.2  Consensus size: 36

       2894 CTCTGGAATC

                 *        *                     
       2904 AACACTACCTAAACTTGATACAAAAGAGAATCCCAA
          1 AACACAACCTAAACCTGATACAAAAGAGAATCCCAA

                                             ** 
       2940 AACACAACCTAAACCTGATACAAAAGAGAATCCTGA
          1 AACACAACCTAAACCTGATACAAAAGAGAATCCCAA

                  
       2976 AACACA
          1 AACACA

       2982 GCCGGTGCTA


Statistics
Matches: 38,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  36   38  1.00

ACGTcount: A:0.51, C:0.26, G:0.09, T:0.14


Consensus pattern (36 bp):   
AACACAACCTAAACCTGATACAAAAGAGAATCCCAA
Done.