Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01271.C3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2220
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34


Found at i:557 original size:95 final size:95

Alignment explanation


    Indices: 394--671  Score: 538
    Period size: 95  Copynumber: 2.9  Consensus size: 95

        384 GACTGTTTCA

                                                  *                          
        394 AAGCTAGCTATTATCCTTTTAGTTGAACGGAAAATGGGTCAGGTAACAAGAATTTCCTCCTCTTA
          1 AAGCTAGCTATTATCCTTTTAGTTGAACGGAAAATGGGCCAGGTAACAAGAATTTCCTCCTCTTA

                                         *
        459 ATATCTTTTTGAAAGATCAAATTCCTACAG
         66 ATATCTTTTTGAAAGATCAAATTCCTACAC

                                                                             
        489 AAGCTAGCTATTATCCTTTTAGTTGAACGGAAAATGGGCCAGGTAACAAGAATTTCCTCCTCTTA
          1 AAGCTAGCTATTATCCTTTTAGTTGAACGGAAAATGGGCCAGGTAACAAGAATTTCCTCCTCTTA

                                          
        554 ATATCTTTTTGAAAGATCAAATTCCTACAC
         66 ATATCTTTTTGAAAGATCAAATTCCTACAC

                                                                             
        584 AAGCTAGCTATTATCCTTTTAGTTGAACGGAAAATGGGCCAGGTAACAAGAATTTCCTCCTCTTA
          1 AAGCTAGCTATTATCCTTTTAGTTGAACGGAAAATGGGCCAGGTAACAAGAATTTCCTCCTCTTA

                                   
        649 ATATCTTTTTGAAAGATCAAATT
         66 ATATCTTTTTGAAAGATCAAATT

        672 GCTATAGGTT


Statistics
Matches: 181,  Mismatches: 2, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  95  181  1.00

ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33


Consensus pattern (95 bp):   
AAGCTAGCTATTATCCTTTTAGTTGAACGGAAAATGGGCCAGGTAACAAGAATTTCCTCCTCTTA
ATATCTTTTTGAAAGATCAAATTCCTACAC
Done.