Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01271.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5044
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36


Found at i:2278 original size:17 final size:17

Alignment explanation


    Indices: 2252--2291  Score: 71
    Period size: 17  Copynumber: 2.4  Consensus size: 17

       2242 GGCCAAGAAC

                 *           
       2252 TTCTTTAGTCGAGCAAT
          1 TTCTTCAGTCGAGCAAT

                             
       2269 TTCTTCAGTCGAGCAAT
          1 TTCTTCAGTCGAGCAAT

                  
       2286 TTCTTC
          1 TTCTTC

       2292 TTTGTCGTCT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  17   22  1.00

ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42


Consensus pattern (17 bp):   
TTCTTCAGTCGAGCAAT

Done.