Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01275.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 419

Length: 699
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30


Found at i:266 original size:18 final size:18

Alignment explanation


    Indices: 243--280  Score: 67
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        233 ACTATCAGCG

                              
        243 CTAGCCCAAGCGAGAGCC
          1 CTAGCCCAAGCGAGAGCC

                        *     
        261 CTAGCCCAAGCGGGAGCC
          1 CTAGCCCAAGCGAGAGCC

              
        279 CT
          1 CT

        281 GAGAAAAGCA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.24, C:0.39, G:0.29, T:0.08


Consensus pattern (18 bp):   
CTAGCCCAAGCGAGAGCC
Done.