Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01276.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 451

Length: 752
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.30


Found at i:329 original size:15 final size:15

Alignment explanation


    Indices: 308--397  Score: 144
    Period size: 15  Copynumber: 6.0  Consensus size: 15

        298 AGGGCCCCTC

                      *    
        308 TGCTGAAGGATCCGA
          1 TGCTGAAGGACCCGA

            *              
        323 GGCTGAAGGACCCGA
          1 TGCTGAAGGACCCGA

                           
        338 TGCTGAAGGACCCGA
          1 TGCTGAAGGACCCGA

                           
        353 TGCTGAAGGACCCGA
          1 TGCTGAAGGACCCGA

               *  *        
        368 TGCCGATGGACCCGA
          1 TGCTGAAGGACCCGA

                           
        383 TGCTGAAGGACCCGA
          1 TGCTGAAGGACCCGA

        398 AGGTTAATGA


Statistics
Matches: 68,  Mismatches: 7, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  15   68  1.00

ACGTcount: A:0.26, C:0.27, G:0.34, T:0.13


Consensus pattern (15 bp):   
TGCTGAAGGACCCGA

Done.