Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01283.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1801
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33


Found at i:282 original size:20 final size:21

Alignment explanation


    Indices: 246--288  Score: 61
    Period size: 20  Copynumber: 2.1  Consensus size: 21

        236 ATATATATAT

                    *         *  
        246 ATATATATTTGTGAATTTTAA
          1 ATATATATATGTGAATTTGAA

                                 
        267 ATATATATAT-TGAATTTGAA
          1 ATATATATATGTGAATTTGAA

              
        287 AT
          1 AT

        289 TCATGTTTCT


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  20   11  0.55
  21    9  0.45

ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49


Consensus pattern (21 bp):   
ATATATATATGTGAATTTGAA
Done.