Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01288.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2355
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30


Found at i:2286 original size:15 final size:15

Alignment explanation


    Indices: 2266--2295  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       2256 TTAAGTACAT

                           
       2266 GTCTGAACCTTGTCC
          1 GTCTGAACCTTGTCC

                           
       2281 GTCTGAACCTTGTCC
          1 GTCTGAACCTTGTCC

       2296 TAAAGGTGTA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.13, C:0.33, G:0.20, T:0.33


Consensus pattern (15 bp):   
GTCTGAACCTTGTCC
Done.