Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00878.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 975

Length: 1626
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31


Found at i:1569 original size:5 final size:5

Alignment explanation


    Indices: 1563--1596  Score: 50
    Period size: 5  Copynumber: 6.8  Consensus size: 5

       1553 TCTATGGTTA

                *     *                             
       1563 TGTTA TGTTA TGTTG TGTTG TGTTG TGTTG TGTT
          1 TGTTG TGTTG TGTTG TGTTG TGTTG TGTTG TGTT

       1597 TGAATATGAA


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   5   28  1.00

ACGTcount: A:0.06, C:0.00, G:0.32, T:0.62


Consensus pattern (5 bp):   
TGTTG

Done.