Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00879.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 536

Length: 894
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.31


Found at i:54 original size:9 final size:9

Alignment explanation


    Indices: 40--67  Score: 56
    Period size: 9  Copynumber: 3.1  Consensus size: 9

         30 ATTTCTCCTT

                     
         40 CACTTACAC
          1 CACTTACAC

                     
         49 CACTTACAC
          1 CACTTACAC

                     
         58 CACTTACAC
          1 CACTTACAC

             
         67 C
          1 C

         68 CCCAGTCTCA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   19  1.00

ACGTcount: A:0.32, C:0.46, G:0.00, T:0.21


Consensus pattern (9 bp):   
CACTTACAC
Done.