Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga04g01299.M2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5297
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Found at i:4180 original size:157 final size:157
Alignment explanation
Indices: 3890--4199 Score: 446
Period size: 157 Copynumber: 2.0 Consensus size: 157
3880 CATCCCCATG
3890 CAGCCGAAACACAAGATCCGGTATAATTATCCATAATAATCCAAGGGCCTTCATGAGTGATATAC
1 CAGCCGAAACACAAGATCCGGTATAATTATCCATAATAATCCAAGGGCCTTCATGAGTGATATAC
** **
3955 CTCCTGATGCAGCGATTGCATGAGTTTTCTAAATATTTAGATATAGTGTCAGCCCACCTATTGAA
66 CTCCTGATGCAGCGATTGCACAAGTTTTCTAAATATCCAGATATAGTGTCAGCCCACCTATTGAA
*
4020 TGAAGAATC-AGAAGTTGAAGAGTCATT
131 TGAAGAATCGA-AAGATGAAGAGTCATT
* * * * *
4047 CAGCCTAAACACAGGATCTGGTATAGTTATCCATAATAAT-CTAGAGGCCTTCATGAGTGATATA
1 CAGCCGAAACACAAGATCCGGTATAATTATCCATAATAATCCAAG-GGCCTTCATGAGTGATATA
* * *
4111 CCTCCTGATGCAGC-ACTTGCACAAGTTTTTTGAATATCCAGATATAGTGTCAGCTCACCTATTG
65 CCTCCTGATGCAGCGA-TTGCACAAGTTTTCTAAATATCCAGATATAGTGTCAGCCCACCTATTG
*
4175 GATGAAGAATCGAAAGATGAAGAGT
129 AATGAAGAATCGAAAGATGAAGAGT
4200 TGTTCGTAGG
Statistics
Matches: 136, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
156 4 0.03
157 131 0.96
158 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (157 bp):
CAGCCGAAACACAAGATCCGGTATAATTATCCATAATAATCCAAGGGCCTTCATGAGTGATATAC
CTCCTGATGCAGCGATTGCACAAGTTTTCTAAATATCCAGATATAGTGTCAGCCCACCTATTGAA
TGAAGAATCGAAAGATGAAGAGTCATT
Done.