Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01318.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3379
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30


Found at i:766 original size:52 final size:52

Alignment explanation


    Indices: 706--810  Score: 210
    Period size: 52  Copynumber: 2.0  Consensus size: 52

        696 TTGATTCAAC

                                                                
        706 GACTTGGGTACATGTTTTCATGCCTAGCTCCTTGCATTTGTTCTTGTTATTT
          1 GACTTGGGTACATGTTTTCATGCCTAGCTCCTTGCATTTGTTCTTGTTATTT

                                                                
        758 GACTTGGGTACATGTTTTCATGCCTAGCTCCTTGCATTTGTTCTTGTTATTT
          1 GACTTGGGTACATGTTTTCATGCCTAGCTCCTTGCATTTGTTCTTGTTATTT

             
        810 G
          1 G

        811 GCTATCTCAA


Statistics
Matches: 53,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  52   53  1.00

ACGTcount: A:0.13, C:0.19, G:0.20, T:0.48


Consensus pattern (52 bp):   
GACTTGGGTACATGTTTTCATGCCTAGCTCCTTGCATTTGTTCTTGTTATTT
Done.