Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01320.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1888
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34


Found at i:1121 original size:13 final size:13

Alignment explanation


    Indices: 1103--1127  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       1093 GCTAAGTCCT

                         
       1103 TAGTTCTATGATA
          1 TAGTTCTATGATA

                        
       1116 TAGTTCTATGAT
          1 TAGTTCTATGAT

       1128 GTTCGGTGTA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.28, C:0.08, G:0.16, T:0.48


Consensus pattern (13 bp):   
TAGTTCTATGATA
Done.