Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00886.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 999

Length: 1666
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29


Found at i:1623 original size:17 final size:18

Alignment explanation


    Indices: 1594--1627  Score: 61
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       1584 AATAATGTGT

                              
       1594 ATAATATTTGTGTTTGGG
          1 ATAATATTTGTGTTTGGG

                             
       1612 ATAATA-TTGTGTTTGG
          1 ATAATATTTGTGTTTGG

       1628 ATATAAATAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  17   10  0.62
  18    6  0.38

ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50


Consensus pattern (18 bp):   
ATAATATTTGTGTTTGGG

Found at i:1633 original size:18 final size:17

Alignment explanation


    Indices: 1592--1638  Score: 58
    Period size: 17  Copynumber: 2.6  Consensus size: 17

       1582 GTAATAATGT

                              
       1592 GTATAATATTTGTGTTTG
          1 GTATAATA-TTGTGTTTG

             *               
       1610 GGATAATATTGTGTTTG
          1 GTATAATATTGTGTTTG

                        
       1627 GATATAAATATT
          1 G-TAT-AATATT

       1639 TTAGAATATA


Statistics
Matches: 25,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  17   10  0.40
  18    9  0.36
  19    6  0.24

ACGTcount: A:0.30, C:0.00, G:0.21, T:0.49


Consensus pattern (17 bp):   
GTATAATATTGTGTTTG
Done.