Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00887.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5168
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37


Found at i:4493 original size:16 final size:15

Alignment explanation


    Indices: 4464--4494  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       4454 TTTGATGTTG

                  *        
       4464 GGATGTTCCATTTTT
          1 GGATGTACCATTTTT

                           
       4479 GGATGTACCATTTTT
          1 GGATGTACCATTTTT

             
       4494 G
          1 G

       4495 TTCATCTGAG


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.16, C:0.13, G:0.23, T:0.48


Consensus pattern (15 bp):   
GGATGTACCATTTTT
Done.