Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01335.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 861

Length: 1436
ACGTcount: A:0.25, C:0.17, G:0.16, T:0.42


Found at i:1238 original size:13 final size:13

Alignment explanation


    Indices: 1220--1244  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       1210 CCTTTGTTTT

                         
       1220 TTTTTTTTTTATC
          1 TTTTTTTTTTATC

                        
       1233 TTTTTTTTTTAT
          1 TTTTTTTTTTAT

       1245 TGTAAGTTCA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.08, C:0.04, G:0.00, T:0.88


Consensus pattern (13 bp):   
TTTTTTTTTTATC
Done.