Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01337.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5333
ACGTcount: A:0.32, C:0.10, G:0.26, T:0.32


Found at i:1036 original size:37 final size:37

Alignment explanation


    Indices: 986--1062  Score: 127
    Period size: 37  Copynumber: 2.1  Consensus size: 37

        976 TGGCTCGGAT

                                *         *      
        986 AATAAAAGGAGCAGACTTGATAGATTTTTGTTAGAAG
          1 AATAAAAGGAGCAGACTTGACAGATTTTTGATAGAAG

                                            *    
       1023 AATAAAAGGAGCAGACTTGACAGATTTTTGATGGAAG
          1 AATAAAAGGAGCAGACTTGACAGATTTTTGATAGAAG

               
       1060 AAT
          1 AAT

       1063 TCTGGTTGAT


Statistics
Matches: 37,  Mismatches: 3, Indels: 0
        0.93            0.08        0.00

Matches are distributed among these distances:
  37   37  1.00

ACGTcount: A:0.42, C:0.06, G:0.25, T:0.27


Consensus pattern (37 bp):   
AATAAAAGGAGCAGACTTGACAGATTTTTGATAGAAG
Done.