Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01350.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 664

Length: 1108
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32


Found at i:1029 original size:19 final size:21

Alignment explanation


    Indices: 973--1036  Score: 89
    Period size: 21  Copynumber: 3.1  Consensus size: 21

        963 AAAGTGGAAG

                                 
        973 ATGCTAGAATATCAAAGAGAA
          1 ATGCTAGAATATCAAAGAGAA

                        *        
        994 ATGCTAGAATATTAAAGAGAA
          1 ATGCTAGAATATCAAAGAGAA

                                  
       1015 A-G-TAG-ATATGCAAAGAGAA
          1 ATGCTAGAATAT-CAAAGAGAA

               
       1034 ATG
          1 ATG

       1037 GAAAAACTAT


Statistics
Matches: 39,  Mismatches: 2, Indels: 5
        0.85            0.04        0.11

Matches are distributed among these distances:
  18    4  0.10
  19   12  0.31
  20    2  0.05
  21   21  0.54

ACGTcount: A:0.52, C:0.06, G:0.22, T:0.20


Consensus pattern (21 bp):   
ATGCTAGAATATCAAAGAGAA
Done.