Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01351.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 585

Length: 976
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36


Found at i:85 original size:21 final size:21

Alignment explanation


    Indices: 38--101  Score: 80
    Period size: 21  Copynumber: 3.1  Consensus size: 21

         28 ATAGTTTTTC

                        *         
         38 CATTTCTCTTTGCATA-TCTA-
          1 CATTTCTCTTT-AATATTCTAG

                                 
         58 C-TTTCTCTTTAATATTCTAG
          1 CATTTCTCTTTAATATTCTAG

                       *         
         78 CATTTCTCTTTGATATTCTAG
          1 CATTTCTCTTTAATATTCTAG

               
         99 CAT
          1 CAT

        102 GGTATTAGAG


Statistics
Matches: 39,  Mismatches: 2, Indels: 5
        0.85            0.04        0.11

Matches are distributed among these distances:
  18    3  0.08
  19   13  0.33
  20    2  0.05
  21   21  0.54

ACGTcount: A:0.20, C:0.22, G:0.06, T:0.52


Consensus pattern (21 bp):   
CATTTCTCTTTAATATTCTAG
Done.