Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00890.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 239

Length: 399
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36


Found at i:40 original size:26 final size:26

Alignment explanation


    Indices: 1--95  Score: 154
    Period size: 26  Copynumber: 3.7  Consensus size: 26

                     *        *       
          1 TAAATGTTCAATGATAATAGGTTAGG
          1 TAAATGTTCCATGATAATGGGTTAGG

                                      
         27 TAAATGTTCCATGATAATGGGTTAGG
          1 TAAATGTTCCATGATAATGGGTTAGG

                    *                 
         53 TAAATGTTTCATGATAATGGGTTAGG
          1 TAAATGTTCCATGATAATGGGTTAGG

                    *        
         79 TAAATGTTTCATGATAA
          1 TAAATGTTCCATGATAA

         96 GAATTTCATG


Statistics
Matches: 66,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   66  1.00

ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37


Consensus pattern (26 bp):   
TAAATGTTCCATGATAATGGGTTAGG
Done.